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PDBsum entry 4dm9

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 4dm9 PDB id
4dm9
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 3500.30 1.42 65.70 4 9.52 6 11.62 1 10 12 14 13 2 8 2 VAL 2[Y], ALA 3[Y], GME 4[Y],
CF0 5[Y] (22 atoms)
2 2465.02 0.00 68.28 2 11.80 3 10.04 5 9 8 9 11 4 8 1  
3 2057.48 0.00 64.10 8 10.45 5 8.55 8 7 6 9 6 4 6 0  
4 1899.28 0.00 69.66 1 13.27 2 10.87 3 5 10 7 9 2 4 2  
5 1614.52 0.00 65.62 5 9.40 7 10.88 2 6 5 8 9 2 4 1 VAL 2[X], ALA 3[X], GME 4[X],
CF0 5[X] (22 atoms)
6 1178.72 0.00 59.02 10 10.80 4 10.07 4 5 4 5 4 0 2 0  
7 1730.95 0.00 64.35 7 9.05 9 10.00 6 7 8 7 8 2 2 0  
8 1183.78 0.00 62.43 9 9.24 8 8.87 7 4 5 6 6 0 4 2  
9 1319.62 0.00 66.99 3 8.90 10 6.99 10 3 8 4 11 3 3 1  
10 795.23 0.00 65.14 6 13.41 1 7.16 9 3 4 1 8 0 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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