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PDBsum entry 4dih

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4dih calculated with MOLE 2.0 PDB id
4dih
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.45 17.7 -0.75 -0.65 7.3 70 0 2 2 1 1 0 0  
2 1.29 1.99 15.4 0.75 0.34 9.3 81 1 0 1 6 0 1 1  
3 1.29 1.98 22.0 0.63 0.15 6.6 83 1 1 2 6 1 2 0  
4 1.94 1.94 23.6 -1.62 -0.58 20.3 82 2 0 1 1 1 0 0  DT 12 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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