 |
PDBsum entry 4dhj
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4dhj calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4dhj
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
8 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.27 |
1.36 |
20.9 |
-0.92 |
-0.40 |
23.8 |
80 |
|
2 |
2 |
0 |
4 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.24 |
2.43 |
18.1 |
1.49 |
0.69 |
7.5 |
72 |
2 |
0 |
1 |
4 |
3 |
0 |
0 |
|
|
3 |
 |
1.16 |
2.81 |
19.6 |
1.53 |
0.76 |
7.6 |
75 |
2 |
0 |
1 |
5 |
3 |
0 |
0 |
|
|
4 |
 |
1.23 |
2.48 |
23.5 |
1.34 |
0.69 |
9.6 |
72 |
2 |
1 |
0 |
5 |
3 |
0 |
0 |
|
|
5 |
 |
1.15 |
2.64 |
25.1 |
1.11 |
0.69 |
11.6 |
74 |
2 |
1 |
0 |
6 |
3 |
0 |
0 |
|
|
6 |
 |
1.29 |
1.58 |
16.1 |
-0.49 |
0.21 |
23.5 |
71 |
2 |
3 |
0 |
3 |
2 |
0 |
0 |
|
|
7 |
 |
1.28 |
1.58 |
18.4 |
-0.66 |
0.16 |
25.5 |
71 |
3 |
1 |
0 |
3 |
2 |
0 |
0 |
|
 |
8 |
 |
1.53 |
1.60 |
15.8 |
-0.44 |
-0.28 |
10.0 |
77 |
2 |
0 |
1 |
3 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program