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PDBsum entry 4dgr

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Cleft analysis for: 4dgr PDB id
4dgr
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1658.81 1.47 79.03 1 13.61 1 8.78 3 9 6 13 6 3 5 0 3LV 488[A] (27 atoms)
2 1127.67 0.00 64.36 3 11.61 2 8.43 4 4 1 8 2 2 5 0 GLC 485[A], PO4 489[A] (17 atoms)
3 1109.11 0.00 63.75 4 6.45 8 8.24 6 9 5 3 3 4 1 0  
4 697.36 0.00 58.15 10 8.31 3 9.10 2 3 0 2 3 3 1 0 NAG 481[A], BGC 487[A] (16 atoms)
5 1071.98 0.00 63.51 5 7.92 4 9.60 1 2 5 3 2 4 2 5  
6 824.77 0.00 59.39 8 7.56 6 7.08 8 4 5 4 3 1 2 0  
7 394.03 0.00 59.18 9 7.14 7 8.41 5 2 1 1 0 2 2 0  
8 616.36 0.00 60.88 6 4.09 10 5.61 10 2 3 4 2 4 2 0 NAG 478[A] (7 atoms)
9 584.30 0.00 60.85 7 4.94 9 7.27 7 2 1 5 6 1 2 0  
10 480.09 0.00 69.57 2 7.72 5 6.82 9 3 1 3 5 3 3 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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