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PDBsum entry 4dgd

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Cleft analysis for: 4dgd PDB id
4dgd
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1320.47 1.44 55.20 9 6.96 3 8.14 1 7 1 10 1 4 6 3  
2 916.31 0.00 63.71 2 7.72 2 7.58 4 6 1 8 4 3 4 0 GOL 200[A] (6 atoms)
3 420.19 0.00 49.66 10 4.20 6 8.02 3 1 0 0 1 2 2 0  
4 543.80 0.00 60.67 6 6.48 4 7.00 5 4 2 2 6 1 3 0  
5 254.39 0.00 59.02 7 9.84 1 8.12 2 2 1 1 1 1 3 0  
6 230.77 0.00 63.01 3 3.25 8 6.28 6 1 2 2 2 0 0 0  
7 237.94 0.00 61.36 4 5.03 5 0.00 9 1 2 0 4 0 3 0  
8 210.52 0.00 60.71 5 3.40 7 4.74 7 1 1 2 2 0 2 0  
9 170.86 0.00 58.23 8 3.09 9 4.22 8 1 2 0 2 1 1 0  
10 109.27 0.00 66.25 1 2.81 10 0.00 10 1 2 2 1 0 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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