PDBsum entry 4ddx Go to PDB code:  Pore analysis for: 4ddx calculated with MOLE 2.0 PDB id 4ddx Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 2.31 26.0 -0.30 0.28 19.9 86 5 1 1 5 1 0 0   2 3.85 3.90 29.0 -1.94 -0.45 21.7 84 5 1 2 2 1 0 0   3 1.44 1.96 29.8 1.67 0.61 4.3 76 1 1 0 7 2 0 0   4 1.27 1.64 30.7 1.63 0.60 5.2 78 1 1 0 8 2 0 0   5 1.47 1.47 37.2 -1.20 -0.27 17.6 80 3 2 1 4 0 1 0   6 1.46 2.47 39.9 -3.09 -0.56 32.5 84 8 6 4 1 2 1 0   7 1.56 2.28 44.2 -1.00 -0.24 17.9 86 6 3 2 5 1 0 0   8 1.52 1.78 26.7 0.74 0.24 9.6 76 3 1 2 8 1 0 0   9 1.31 2.02 28.7 0.90 0.25 9.8 78 4 2 1 7 1 0 0   10 1.44 1.96 29.8 1.67 0.61 4.3 76 1 1 0 7 2 0 0   11 1.27 1.64 30.7 1.63 0.60 5.2 78 1 1 0 8 2 0 0   12 3.63 3.79 33.3 -1.74 -0.44 18.2 88 5 1 3 3 1 0 0   13 1.47 1.47 37.2 -1.20 -0.27 17.6 80 3 2 1 4 0 1 0   14 1.47 2.48 37.9 -3.04 -0.63 34.1 84 9 6 4 1 1 3 0   15 1.56 2.29 38.2 -0.75 0.05 18.1 87 5 2 3 5 1 0 0   16 1.56 2.29 44.2 -0.96 -0.22 17.5 86 6 3 2 5 1 0 0   17 1.12 2.71 107.4 -2.71 -0.60 28.0 84 13 5 6 3 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.