PDBsum entry 4ddu Go to PDB code:  Tunnel analysis for: 4ddu calculated with MOLE 2.0 PDB id 4ddu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 2.78 17.9 2.16 0.72 1.0 84 0 0 3 6 2 0 0   2 1.35 2.71 19.0 2.20 0.74 1.0 85 0 0 3 7 2 0 0   3 1.35 2.82 20.8 2.52 0.86 4.3 76 0 1 1 6 2 0 0   4 1.33 2.77 21.9 2.52 0.86 3.8 78 0 1 1 7 2 0 0   5 1.25 2.01 15.1 1.51 0.78 11.8 58 1 2 0 2 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.