PDBsum entry 4d9l Go to PDB code:  Pore analysis for: 4d9l calculated with MOLE 2.0 PDB id 4d9l Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   23 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.81 3.99 39.8 -1.52 -0.67 10.0 87 3 0 6 2 0 1 0   2 2.71 3.83 41.2 -1.22 -0.61 9.8 89 3 2 4 2 1 2 0   3 3.00 3.18 43.0 -1.43 -0.65 9.0 91 2 2 7 3 1 2 0   4 3.58 4.00 45.8 -1.10 -0.68 7.8 91 2 2 8 2 2 4 0   5 2.78 3.23 45.8 -1.39 -0.62 12.4 89 4 2 6 2 1 3 0   6 4.01 4.01 46.7 -1.46 -0.70 9.0 87 4 0 7 2 0 1 0   7 2.23 2.52 50.9 -1.60 -0.71 10.7 89 2 3 5 4 0 2 0   8 3.00 3.18 52.5 -1.19 -0.66 5.5 88 2 2 8 3 1 6 0   9 2.78 3.23 55.8 -1.53 -0.68 11.4 87 4 2 5 3 0 4 0   10 2.25 2.50 57.4 -1.36 -0.66 10.4 87 2 4 7 3 1 4 0   11 2.78 3.17 65.2 -1.23 -0.65 8.6 86 4 2 7 2 1 8 0   12 2.24 2.51 66.9 -1.19 -0.68 7.3 86 2 4 8 3 1 8 0   13 2.57 2.57 69.4 -1.04 -0.69 7.5 89 2 3 6 2 1 6 0   14 2.52 2.52 69.4 -1.17 -0.69 5.9 86 1 3 6 2 0 7 0   15 2.00 2.48 74.7 -0.84 -0.62 7.1 87 2 4 8 6 2 3 0   16 1.74 2.27 84.2 -1.79 -0.56 18.7 84 6 6 6 3 0 4 0   17 2.29 2.52 83.8 -1.19 -0.69 7.8 84 1 5 6 2 0 9 0   18 1.87 2.26 90.0 -0.88 -0.62 7.5 88 2 4 9 6 2 4 0   19 2.72 2.72 91.1 -1.16 -0.65 8.2 86 4 3 5 2 0 9 0   20 2.01 2.10 98.2 -0.95 -0.60 6.0 85 2 4 9 7 1 7 0   21 1.78 2.24 112.0 -1.62 -0.59 14.4 86 5 6 8 6 0 5 0   22 2.03 2.36 111.7 -1.03 -0.60 8.2 84 4 4 8 6 1 9 0   23 1.84 2.22 113.0 -0.99 -0.62 7.2 84 2 6 9 7 1 8 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.