PDBsum entry 4d9l Go to PDB code:  Tunnel analysis for: 4d9l calculated with MOLE 2.0 PDB id 4d9l Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 2.65 17.3 0.02 -0.38 7.5 77 1 1 2 3 1 1 0   2 1.32 2.65 17.5 -0.09 -0.42 7.1 78 0 2 2 3 1 1 0   3 1.32 2.65 23.4 -0.31 -0.46 8.6 81 1 2 3 3 1 1 0   4 1.40 1.77 17.3 -0.13 -0.42 6.7 78 0 3 2 3 1 1 0   5 1.38 1.78 22.6 -0.22 -0.40 5.3 84 1 1 4 3 1 1 0   6 1.09 1.34 17.2 -1.08 -0.39 10.3 83 2 0 2 0 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.