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PDBsum entry 4d8s

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Cleft analysis for: 4d8s PDB id
4d8s
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2343.52 1.89 73.87 1 16.23 1 10.56 1 9 8 12 5 5 7 0 0HX 502[A] (20 atoms)
2 1241.58 0.00 65.55 2 7.71 4 9.44 2 3 2 8 4 4 4 2  
3 930.66 0.00 60.84 7 9.47 2 7.87 5 3 2 6 1 2 5 0  
4 696.94 0.00 60.60 8 9.10 3 8.47 4 2 1 7 1 1 3 0  
5 562.36 0.00 56.48 9 5.55 8 8.71 3 3 2 3 3 1 3 0  
6 331.59 0.00 61.44 6 5.79 6 7.69 6 3 1 2 0 2 1 0  
7 545.91 0.00 56.37 10 4.65 10 6.36 8 3 2 6 3 1 1 0  
8 469.55 0.00 64.44 3 5.48 9 5.52 9 2 2 4 3 2 2 0  
9 564.89 0.00 64.03 4 7.16 5 6.60 7 5 3 3 2 2 4 0  
10 453.94 0.00 63.48 5 5.74 7 5.43 10 1 1 1 5 2 2 2  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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