PDBsum entry 4d80 Go to PDB code:  Pore analysis for: 4d80 calculated with MOLE 2.0 PDB id 4d80 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.23 4.00 28.6 -1.71 -0.43 19.1 80 4 3 2 3 1 1 0   2 1.86 1.87 44.7 -1.15 -0.26 21.4 81 6 2 2 4 2 1 0   3 2.64 3.45 54.1 -2.25 -0.56 24.3 85 4 5 4 4 1 2 0   4 1.99 2.92 65.3 -1.95 -0.42 24.1 78 5 5 4 5 4 1 0   5 1.80 1.80 68.6 -1.51 -0.48 19.2 81 6 5 4 7 3 1 0   6 1.80 1.81 69.8 -1.68 -0.62 19.8 84 4 6 2 4 3 0 0   7 2.16 3.15 70.1 -2.24 -0.49 24.5 84 6 5 4 4 2 2 0   8 1.80 1.81 78.8 -1.72 -0.63 20.1 88 7 9 6 8 1 2 0   9 1.66 2.03 82.6 -2.04 -0.45 23.9 82 7 8 5 6 1 4 0   10 2.12 4.12 83.5 -2.40 -0.53 27.9 82 9 5 5 4 1 4 0   11 1.81 1.82 102.5 -2.07 -0.41 26.1 77 10 8 3 5 6 1 0   12 2.40 2.56 106.6 -1.88 -0.46 24.2 77 9 10 2 6 4 1 0   13 2.43 3.91 113.8 -1.90 -0.51 23.8 82 11 13 6 10 2 3 0   14 2.10 2.55 129.0 -2.23 -0.46 26.5 82 14 13 7 6 5 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.