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PDBsum entry 4d5k
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Tunnel analysis for: 4d5k calculated with  MOLE 2.0
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PDB id
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4d5k
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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10 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.43 |
1.46 |
21.9 |
-1.37 |
-0.35 |
19.5 |
75 |
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3 |
2 |
2 |
1 |
2 |
0 |
0 |
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2 |
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1.25 |
1.48 |
23.4 |
0.23 |
-0.25 |
8.3 |
93 |
2 |
1 |
2 |
6 |
0 |
0 |
0 |
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3 |
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1.18 |
1.18 |
26.9 |
-0.26 |
-0.34 |
13.9 |
89 |
3 |
2 |
2 |
4 |
0 |
0 |
0 |
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4 |
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1.21 |
1.21 |
27.1 |
-1.77 |
-0.62 |
23.0 |
82 |
5 |
3 |
2 |
1 |
0 |
0 |
0 |
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5 |
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1.32 |
1.43 |
32.0 |
-0.73 |
-0.26 |
18.4 |
81 |
5 |
4 |
2 |
6 |
0 |
0 |
1 |
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6 |
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1.19 |
1.19 |
36.0 |
-1.33 |
-0.46 |
19.1 |
82 |
4 |
4 |
3 |
2 |
1 |
1 |
0 |
SO4 1687 B
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7 |
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1.29 |
1.44 |
40.4 |
-0.62 |
-0.18 |
16.1 |
79 |
5 |
4 |
2 |
7 |
1 |
1 |
1 |
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8 |
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1.30 |
1.38 |
41.0 |
-0.39 |
-0.16 |
14.7 |
82 |
4 |
4 |
3 |
7 |
1 |
1 |
1 |
SO4 1687 B
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9 |
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1.65 |
1.65 |
20.0 |
-1.75 |
-0.56 |
24.7 |
80 |
3 |
2 |
1 |
2 |
1 |
0 |
0 |
SO4 1687 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program