PDBsum entry 4d4v Go to PDB code:  Tunnel analysis for: 4d4v calculated with MOLE 2.0 PDB id 4d4v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.49 25.4 0.18 -0.03 13.8 84 2 2 0 6 0 0 0  DMS 1688 A 2 1.18 1.49 28.0 0.39 0.03 12.3 86 2 2 0 7 0 0 0  DMS 1688 A 3 1.17 1.50 32.7 -1.61 -0.55 23.0 83 4 5 3 4 0 0 0  DMS 1688 A 4 1.16 1.54 35.3 -1.18 -0.42 20.7 84 4 5 3 5 0 0 0  DMS 1688 A 5 1.19 1.51 35.9 -1.86 -0.55 23.3 85 3 5 4 5 0 0 0  DMS 1688 A SO4 1688 B 6 1.15 1.49 38.4 -1.65 -0.49 22.7 86 3 5 4 6 0 0 0  DMS 1688 A SO4 1688 B 7 1.17 1.49 40.8 -1.44 -0.43 21.1 80 5 4 3 5 0 0 0  DMS 1688 A 8 1.15 1.50 43.4 -1.20 -0.36 19.4 81 5 4 3 6 0 0 0  DMS 1688 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.