PDBsum entry 4d4e Go to PDB code:  Tunnel analysis for: 4d4e calculated with MOLE 2.0 PDB id 4d4e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 1.63 33.8 -1.65 -0.59 8.4 97 1 2 11 6 0 0 0  GOL 1251 B 2 1.41 1.63 36.3 -1.09 -0.51 6.8 96 2 2 11 7 0 0 0  GOL 1251 B 3 1.38 1.62 39.7 -1.59 -0.62 6.2 97 0 2 11 3 0 0 0  GOL 1251 B 4 1.41 1.63 44.4 -0.93 -0.54 6.6 98 0 2 8 8 0 0 0  GOL 1251 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.