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PDBsum entry 4d2x
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Pore analysis for: 4d2x calculated with MOLE 2.0 PDB id
4d2x
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.18 2.18 28.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 2.13 2.13 47.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 562 F
3 1.72 1.72 83.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
4 1.70 1.70 88.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 A
5 1.72 1.72 96.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 562 F MSE 622 F
6 1.59 1.59 98.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 F
7 2.13 2.13 101.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 E MSE 716 E MSE 716 F
8 2.12 2.12 101.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 716 A MSE 634 F MSE 716 F
9 2.88 2.88 104.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 E MSE 716 E MSE 716 F
10 2.15 2.15 108.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 716 A
11 1.66 1.66 125.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 A MSE 283 A
12 2.87 2.87 137.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 D MSE 716 D MSE 716 F
13 2.64 2.64 144.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 E MSE 716 E
14 2.14 2.14 147.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 D MSE 716 D MSE 716 F
15 1.38 1.38 144.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 F MSE 283 F MSE 622 F
16 2.43 2.43 150.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 716 A MSE 634 E MSE 716 E
17 3.21 3.21 156.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 A MSE 283 A MSE 242 B MSE 283 B MSE 622 F
18 2.76 2.76 155.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 C MSE 716 C MSE 716 F
19 2.73 2.73 162.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 D MSE 716 D
20 2.53 2.53 165.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 B MSE 634 F MSE 716 F
21 1.64 1.64 169.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 A MSE 283 A MSE 242 F MSE 283 F
22 2.59 2.59 170.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 716 C
23 1.54 1.54 177.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 716 B MSE 634 F MSE 716 F
24 1.54 1.54 182.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 A MSE 283 A MSE 622 A
25 1.54 1.54 182.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 C MSE 283 C
26 1.51 1.51 192.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 716 B
27 1.69 1.69 198.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 A MSE 716 C
28 1.69 1.69 209.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 A MSE 634 E MSE 716 E
29 1.68 1.68 217.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 A MSE 716 D
30 1.53 1.53 225.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 242 E MSE 283 E MSE 242 F MSE 283 F MSE 622 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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