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PDBsum entry 4d2u
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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 4d2u calculated with MOLE 2.0 PDB id
4d2u
Pores calculated on whole structure Pores calculated excluding ligands
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26 pores, coloured by radius 105 pores, coloured by radius 105 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.55 2.55 37.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 2.29 2.29 40.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
3 2.24 2.24 43.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 C MSE 716 C
4 2.17 2.17 43.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
5 2.18 2.18 45.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
6 2.13 2.13 46.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 B
7 2.48 2.48 46.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
8 2.24 2.24 49.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 C MSE 716 C
9 1.20 1.20 49.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
10 2.02 2.02 63.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
11 2.81 2.81 64.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
12 2.33 2.33 69.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 B MSE 716 B
13 1.95 1.95 69.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 B
14 2.34 2.34 72.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
15 1.22 1.22 73.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 B MSE 716 B
16 2.25 2.25 84.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
17 2.36 2.36 88.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 B MSE 716 B
18 2.44 2.44 91.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
19 2.00 2.00 103.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
20 2.18 2.18 112.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 A MSE 716 A
21 2.75 2.75 118.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 A MSE 716 A
22 2.43 2.43 124.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
23 2.36 2.36 122.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 A MSE 716 A
24 1.99 1.99 128.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 A MSE 716 A MSE 622 B
25 2.78 2.78 139.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
26 2.78 2.78 141.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
27 2.78 2.78 144.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 E MSE 716 E
28 1.95 1.95 151.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 622 B
29 2.01 2.01 177.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 E MSE 716 E
30 2.27 2.27 176.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 634 D MSE 716 D
31 2.26 2.26 25.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 F
32 2.52 2.52 26.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
33 2.27 2.27 27.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
34 2.04 2.04 27.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
35 2.39 2.39 28.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 F
36 3.10 3.10 28.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
37 2.16 2.16 30.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
38 2.26 2.26 32.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 F
39 2.27 2.27 32.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
40 2.48 2.48 32.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
41 1.57 1.57 33.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
42 1.87 1.87 41.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
43 1.89 1.89 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 D
44 1.89 1.89 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
45 2.45 2.45 27.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
46 2.27 2.27 27.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
47 2.71 2.71 27.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
48 2.39 2.39 28.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 D
49 3.10 3.10 28.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
50 1.87 1.87 31.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
51 2.27 2.27 32.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
52 2.47 2.47 34.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
53 2.25 2.25 25.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
54 2.27 2.27 27.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
55 2.71 2.71 27.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
56 2.39 2.39 28.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 E
57 3.10 3.10 28.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
58 2.48 2.48 32.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
59 1.87 1.87 41.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
60 1.89 1.89 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 C
61 1.89 1.89 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
62 2.45 2.45 27.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
63 2.26 2.26 27.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 C
64 2.71 2.71 27.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
65 2.30 2.30 27.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
66 2.26 2.26 28.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
67 2.18 2.18 29.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
68 1.87 1.87 31.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
69 2.47 2.47 34.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
70 2.49 2.49 37.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
71 3.10 3.10 40.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
72 2.46 2.46 40.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
73 3.10 3.10 43.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
74 1.89 1.89 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 B
75 2.26 2.26 27.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 B
76 2.04 2.04 27.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
77 2.30 2.30 27.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
78 2.26 2.26 28.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
79 2.45 2.45 28.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
80 2.19 2.19 29.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
81 2.16 2.16 30.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
82 1.87 1.87 31.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
83 2.26 2.26 32.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 B
84 2.26 2.26 32.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 B
85 1.57 1.57 33.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
86 2.48 2.48 34.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
87 2.49 2.49 38.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
88 3.10 3.10 40.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
89 2.46 2.46 40.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
90 3.10 3.10 43.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
91 2.25 2.25 25.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 A
92 2.26 2.26 27.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 A
93 2.04 2.04 27.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
94 2.30 2.30 27.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
95 2.26 2.26 28.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
96 2.19 2.19 29.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
97 2.16 2.16 30.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
98 2.26 2.26 32.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  MSE 35 A
99 2.48 2.48 32.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
100 1.57 1.57 33.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
101 2.47 2.47 33.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
102 2.49 2.49 37.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
103 3.10 3.10 38.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
104 3.10 3.10 40.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
105 1.87 1.87 41.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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