PDBsum entry 4d1k Go to PDB code:  Pore analysis for: 4d1k calculated with MOLE 2.0 PDB id 4d1k Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.55 2.55 29.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   2 2.59 2.59 29.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   3 2.53 2.53 30.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   4 2.43 2.43 32.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   5 2.09 2.09 33.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   6 2.92 2.92 35.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   7 2.09 2.09 38.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   8 2.42 2.42 47.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   9 2.15 2.15 48.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   10 2.53 2.53 49.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   11 3.25 3.25 53.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   12 2.09 2.09 55.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   13 2.52 2.52 58.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   14 2.53 2.53 58.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   15 2.87 2.87 59.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   16 2.42 2.42 60.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   17 2.60 2.60 62.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   18 2.09 2.09 63.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   19 2.85 2.85 66.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   20 2.56 2.56 66.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   21 2.94 2.94 68.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   22 2.10 2.10 70.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   23 2.43 2.43 70.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   24 2.95 2.95 70.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   25 2.38 2.38 73.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   26 2.58 2.58 75.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   27 2.59 2.59 75.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   28 2.61 2.61 76.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   29 2.60 2.60 80.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   30 2.34 2.34 81.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.