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PDBsum entry 4cmh

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protein Protein-protein interface(s) links
Hydrolase/immune system PDB id
4cmh

 

 

 

 

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Contents
Protein chains
240 a.a.
216 a.a.
213 a.a.
Waters ×590
PDB id:
4cmh
Name: Hydrolase/immune system
Title: Crystal structure of cd38 with a novel cd38-targeting antibody sar650984
Structure: Adp-ribosyl cyclase 1. Chain: a. Fragment: extracellular domain, residues 45-300. Synonym: cyclic adp-ribose hydrolase 1, cadpr hydrolase 1, t10, cd38, acyl-ribose cyclase 1. Engineered: yes. Mutation: yes. Heavy chain of sar650984-fab fragment. Chain: b.
Source: Homo sapiens. Organism_taxid: 9606. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek-293t. Mus musculus. House mouse. Organism_taxid: 10090. Organism_taxid: 10090
Resolution:
1.53Å     R-factor:   0.189     R-free:   0.208
Authors: J.Deckert,M.C.Wetzel,P.U.Park,L.M.Bartle,A.Skaletskaya,V.Goldmacher, F.Vallee,Q.Zhouliu,P.Ferrari,S.Pouzieux,C.Lahoute,C.Dumontet, A.Plesa,M.Chiron,P.Lejeune,T.Chittenden,V.Blanc
Key ref: J.Deckert et al. (2014). SAR650984, a novel humanized CD38-targeting antibody, demonstrates potent antitumor activity in models of multiple myeloma and other CD38+ hematologic malignancies. Clin Cancer Res, 20, 4574-4583. PubMed id: 24987056 DOI: 10.1158/1078-0432.CCR-14-0695
Date:
15-Jan-14     Release date:   16-Jul-14    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P28907  (CD38_HUMAN) -  ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 from Homo sapiens
Seq:
Struc:
300 a.a.
240 a.a.*
Protein chain
No UniProt id for this chain
Struc: 216 a.a.
Protein chain
No UniProt id for this chain
Struc: 213 a.a.
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 4 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class 2: Chain A: E.C.2.4.99.20  - 2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: nicotinate + NADP+ = nicotinate-adenine dinucleotide phosphate + nicotinamide
nicotinate
+ NADP(+)
= nicotinate-adenine dinucleotide phosphate
+ nicotinamide
   Enzyme class 3: Chain A: E.C.3.2.2.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
   Enzyme class 4: Chain A: E.C.3.2.2.6  - ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: NAD+ + H2O = ADP-D-ribose + nicotinamide + H+
NAD(+)
+ H2O
= ADP-D-ribose
+ nicotinamide
+ H(+)
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1158/1078-0432.CCR-14-0695 Clin Cancer Res 20:4574-4583 (2014)
PubMed id: 24987056  
 
 
SAR650984, a novel humanized CD38-targeting antibody, demonstrates potent antitumor activity in models of multiple myeloma and other CD38+ hematologic malignancies.
J.Deckert, M.C.Wetzel, L.M.Bartle, A.Skaletskaya, V.S.Goldmacher, F.Vallée, Q.Zhou-Liu, P.Ferrari, S.Pouzieux, C.Lahoute, C.Dumontet, A.Plesa, M.Chiron, P.Lejeune, T.Chittenden, P.U.Park, V.Blanc.
 
  ABSTRACT  
 
No abstract given.

 

 

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