PDBsum entry 4ch8

Pore analysis for: 4ch8 calculated with

MOLE 2.0

PDB id

4ch8

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

2.18

38.1

0.90

0.57

4.7

70

0

2

3

5

6

2

0

2

1.19

2.17

40.3

-0.77

-0.24

9.0

81

2

1

4

4

2

0

0

3

2.27

2.38

40.7

-1.05

-0.44

19.4

81

2

5

3

3

1

0

0

4

1.26

2.99

51.5

-1.86

-0.44

32.1

80

6

7

1

2

1

0

0

5

1.29

2.99

54.1

-1.12

-0.55

22.4

80

2

8

3

3

2

0

0

6

3.09

3.86

54.4

-0.84

-0.30

23.6

81

4

9

2

4

1

0

0

7

1.30

3.01

93.6

-1.07

-0.44

21.4

80

4

10

6

6

2

0

0

8

1.44

1.44

31.0

-1.45

-0.60

18.8

71

3

4

1

1

3

0

0

NA 1580 D 0G6 1581 D

9

1.41

1.41

40.9

-1.56

-0.53

20.3

78

5

4

1

2

1

0

0

NA 1580 H 0G6 1581 H

10

1.53

2.92

30.8

-1.40

0.02

16.9

63

2

2

2

1

4

1

0

0G6 1579 B

11

1.42

1.42

42.3

-1.24

-0.52

17.4

71

3

4

1

1

3

0

0

NA 1578 B 0G6 1579 B

12

1.41

1.41

47.4

-1.81

-0.73

19.8

77

4

5

3

0

2

1

0

NA 1578 B 0G6 1579 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.