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PDBsum entry 4ce4

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4ce4 calculated with MOLE 2.0 PDB id
4ce4
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.44 117.7 -0.87 -0.54 11.9 84 7 0 3 2 1 0 0  C 14 A A 15 A A 18 A U 19 A C 240 A G 241 A A 243
A A 244 A G 293 A A 297 A A 335 A A 336 A C 341 A
C 342 A U 343 A G 344 A G 345 A U 346 A G 347 A U
353 A G 354 A A 630 A U 631 A G 632 A A 1052 A A
1053 A A 1265 A G 1266 A UNK 1414 z UNK 1418 z
UNK 1419 z UNK 2318 z UNK 2319 z UNK 2321 z
2 1.21 1.22 122.6 -0.87 -0.61 10.2 82 4 1 2 1 1 0 0  A 190 A C 240 A G 241 A G 293 A U 353 A G 354 A C
559 A A 560 A U 561 A C 565 A A 630 A U 631 A G
632 A G 1020 A U 1021 A G 1025 A A 1026 A G 1046
A A 1047 A C 1048 A G 1049 A A 1050 A G 1051 A A
1052 A A 1053 A A 1055 A A 1265 A G 1266 A C 1276
A G 1277 A G 1309 A G 1310 A G 1311 A G 1326 A A
1393 A G 1397 A A 1398 A U 1430 A U 1431 A U 1432
A
3 1.21 1.22 131.1 -0.60 -0.40 9.3 80 5 0 4 3 4 0 0  A 119 A C 120 A C 121 A A 128 A C 240 A G 241 A G
293 A A 297 A A 301 A A 336 A U 353 A G 354 A A
630 A U 631 A G 632 A C 661 A U 662 A C 663 A G
664 A A 674 A A 694 A C 756 A C 757 A C 758 A C
761 A A 762 A C 763 A A 764 A G 765 A G 778 A A
780 A A 1052 A A 1053 A A 1265 A G 1266 A
4 1.21 1.22 136.6 -0.72 -0.59 8.8 87 4 0 4 2 1 0 0  C 240 A G 241 A A 243 A A 244 A C 245 A C 246 A G
293 A A 297 A A 322 A G 323 A G 324 A G 326 A A
335 A A 336 A A 339 A G 340 A C 341 A C 342 A U
353 A G 354 A A 630 A U 631 A G 632 A U 847 A A
848 A C 850 A A 851 A A 854 A G 864 A A 1052 A A
1053 A G 1065 A C 1066 A U 1067 A U 1077 A A 1078
A C 1137 A A 1138 A A 1265 A G 1266 A
5 1.21 1.22 142.7 -0.76 -0.27 12.2 80 9 0 4 4 5 0 0  N 35 A N 37 A A 119 A C 120 A C 121 A A 128 A C
240 A G 241 A G 293 A A 297 A A 316 A A 336 A U
353 A G 354 A A 630 A U 631 A G 632 A G 670 A U
672 A A 708 A C 709 A U 750 A C 758 A C 761 A A
1052 A A 1053 A A 1265 A G 1266 A
6 1.08 1.08 26.7 0.33 -0.06 5.4 75 1 1 1 6 1 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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