 |
PDBsum entry 4ce4
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4ce4 calculated with MOLE 2.0
|
PDB id
|
|
|
|
4ce4
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
8 tunnels,
coloured by tunnel radius |
 |
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.44 |
117.7 |
-0.87 |
-0.54 |
11.9 |
84 |
 |
7 |
0 |
3 |
2 |
1 |
0 |
0 |
 |
C 14 A A 15 A A 18 A U 19 A C 240 A G 241 A A 243 A A 244 A G 293 A A 297 A A 335 A A 336 A C 341 A C 342 A U 343 A G 344 A G 345 A U 346 A G 347 A U 353 A G 354 A A 630 A U 631 A G 632 A A 1052 A A 1053 A A 1265 A G 1266 A UNK 1414 z UNK 1418 z UNK 1419 z UNK 2318 z UNK 2319 z UNK 2321 z
|
 |
 |
2 |
 |
1.21 |
1.22 |
122.6 |
-0.87 |
-0.61 |
10.2 |
82 |
4 |
1 |
2 |
1 |
1 |
0 |
0 |
A 190 A C 240 A G 241 A G 293 A U 353 A G 354 A C 559 A A 560 A U 561 A C 565 A A 630 A U 631 A G 632 A G 1020 A U 1021 A G 1025 A A 1026 A G 1046 A A 1047 A C 1048 A G 1049 A A 1050 A G 1051 A A 1052 A A 1053 A A 1055 A A 1265 A G 1266 A C 1276 A G 1277 A G 1309 A G 1310 A G 1311 A G 1326 A A 1393 A G 1397 A A 1398 A U 1430 A U 1431 A U 1432 A
|
 |
3 |
 |
1.21 |
1.22 |
131.1 |
-0.60 |
-0.40 |
9.3 |
80 |
5 |
0 |
4 |
3 |
4 |
0 |
0 |
A 119 A C 120 A C 121 A A 128 A C 240 A G 241 A G 293 A A 297 A A 301 A A 336 A U 353 A G 354 A A 630 A U 631 A G 632 A C 661 A U 662 A C 663 A G 664 A A 674 A A 694 A C 756 A C 757 A C 758 A C 761 A A 762 A C 763 A A 764 A G 765 A G 778 A A 780 A A 1052 A A 1053 A A 1265 A G 1266 A
|
 |
4 |
 |
1.21 |
1.22 |
136.6 |
-0.72 |
-0.59 |
8.8 |
87 |
4 |
0 |
4 |
2 |
1 |
0 |
0 |
C 240 A G 241 A A 243 A A 244 A C 245 A C 246 A G 293 A A 297 A A 322 A G 323 A G 324 A G 326 A A 335 A A 336 A A 339 A G 340 A C 341 A C 342 A U 353 A G 354 A A 630 A U 631 A G 632 A U 847 A A 848 A C 850 A A 851 A A 854 A G 864 A A 1052 A A 1053 A G 1065 A C 1066 A U 1067 A U 1077 A A 1078 A C 1137 A A 1138 A A 1265 A G 1266 A
|
 |
5 |
 |
1.21 |
1.22 |
142.7 |
-0.76 |
-0.27 |
12.2 |
80 |
9 |
0 |
4 |
4 |
5 |
0 |
0 |
N 35 A N 37 A A 119 A C 120 A C 121 A A 128 A C 240 A G 241 A G 293 A A 297 A A 316 A A 336 A U 353 A G 354 A A 630 A U 631 A G 632 A G 670 A U 672 A A 708 A C 709 A U 750 A C 758 A C 761 A A 1052 A A 1053 A A 1265 A G 1266 A
|
 |
6 |
 |
1.08 |
1.08 |
26.7 |
0.33 |
-0.06 |
5.4 |
75 |
1 |
1 |
1 |
6 |
1 |
0 |
1 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |