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PDBsum entry 4cad

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4cad calculated with MOLE 2.0 PDB id
4cad
Pores calculated on whole structure Pores calculated excluding ligands

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33 pores, coloured by radius 35 pores, coloured by radius 35 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.98 2.16 26.2 -1.32 -0.77 4.6 96 0 2 9 2 0 1 0  
2 1.35 1.35 49.1 -1.11 -0.54 13.0 88 4 3 3 2 1 2 0  
3 1.15 2.76 54.6 -1.55 -0.27 18.4 83 3 3 5 1 2 0 0  
4 1.32 1.49 68.4 -2.15 -0.61 23.3 89 6 4 7 2 1 1 0  
5 1.31 1.49 71.1 -1.53 -0.54 15.6 86 6 3 7 3 1 2 0  
6 1.24 1.49 73.6 -1.02 -0.48 11.3 85 5 2 5 2 1 1 0  
7 1.30 1.48 82.7 -1.60 -0.57 18.2 91 6 4 8 4 1 2 0  
8 1.32 1.50 85.0 -1.66 -0.50 15.7 87 5 3 7 4 2 2 0  
9 1.31 1.50 86.0 -1.59 -0.41 13.9 90 5 2 9 3 3 0 0  
10 2.97 4.40 88.6 -0.87 -0.36 8.1 85 2 3 7 6 3 6 0  
11 3.42 3.96 89.7 -0.85 -0.28 7.0 87 2 2 9 5 4 4 0  
12 1.17 2.77 94.6 -1.66 -0.54 17.4 86 6 7 12 5 2 5 0  
13 1.37 1.40 103.2 -1.03 -0.46 10.9 85 4 5 7 5 2 4 0  
14 2.95 4.35 106.5 -1.12 -0.38 10.5 82 4 4 6 6 3 4 0  
15 2.78 2.77 107.9 -1.41 -0.47 15.1 82 6 7 7 3 3 3 0  
16 3.31 3.94 107.6 -1.06 -0.30 9.2 85 4 3 8 5 4 2 0  
17 1.19 2.77 108.3 -1.62 -0.48 17.4 84 5 8 10 6 3 6 0  
18 1.21 2.76 110.6 -1.33 -0.43 12.1 84 4 6 11 5 4 7 0  
19 1.22 1.22 111.7 -0.86 -0.52 8.2 86 3 5 11 8 2 5 0  
20 1.21 2.76 111.6 -1.32 -0.37 11.5 86 4 5 13 4 5 5 0  
21 1.34 1.36 112.7 -1.20 -0.44 12.7 86 4 4 6 7 3 4 0  
22 1.34 1.36 113.8 -1.12 -0.36 11.2 89 4 3 8 6 4 2 0  
23 1.24 2.78 116.4 -1.26 -0.44 13.3 83 5 8 11 7 3 7 0  
24 1.61 1.61 116.5 -0.94 -0.35 12.6 83 5 5 8 8 3 5 0  
25 1.16 2.76 122.6 -1.33 -0.49 14.7 85 5 8 11 8 3 7 0  
26 1.68 1.67 124.5 -0.77 -0.34 9.5 82 5 5 9 9 3 6 0  
27 2.68 2.69 127.7 -1.26 -0.46 12.5 83 6 4 12 5 6 1 0  
28 1.38 1.38 130.8 -0.83 -0.39 11.1 85 5 5 9 10 3 6 0  
29 2.19 2.72 168.4 -1.76 -0.53 17.9 86 11 10 19 6 4 5 0  
30 2.21 2.30 26.4 -0.99 -0.21 14.3 82 2 2 5 4 4 0 0  
31 1.88 2.50 31.4 -1.54 -0.37 13.5 82 2 2 4 1 5 0 0  
32 2.10 2.39 35.3 -0.60 -0.41 11.1 87 0 3 3 2 2 0 0  
33 2.26 2.78 41.7 -1.04 -0.40 10.3 79 1 2 4 1 6 0 0  
34 2.70 2.71 49.5 -1.49 -0.49 12.9 84 1 2 7 3 5 1 0  
35 2.52 2.52 35.3 -1.00 -0.32 8.8 83 1 1 5 3 5 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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