PDBsum entry 4by7 Go to PDB code:  Pore analysis for: 4by7 calculated with MOLE 2.0 PDB id 4by7 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.31 2.43 38.7 -2.36 -0.59 24.0 78 2 3 4 2 1 2 0   2 3.00 3.00 51.4 -0.92 -0.61 7.2 76 3 0 1 2 1 2 0  DT 11 N DG 12 N DA 13 N DG 14 N DG 2 T DC 3 T DG 8 T DT 9 T DA 10 T 3 2.16 3.63 53.6 -1.65 -0.42 23.2 84 9 6 4 5 0 1 0   4 4.34 4.34 61.6 -1.60 -0.60 21.4 93 4 5 10 7 0 0 0  DG 14 N DA 7 T 5 1.97 1.97 63.0 -0.80 -0.32 13.4 90 4 0 2 9 0 1 0  DA 8 N DC 9 N DT 10 N DT 11 N DC 3 T DT 4 T 6 1.23 1.45 65.5 -1.99 -0.39 23.9 82 11 3 5 4 2 2 0   7 2.49 3.74 76.9 -1.53 -0.60 18.8 85 4 3 3 3 0 2 0  DT 11 N DG 12 N DG 2 T DC 3 T DA 10 T DC 11 T 8 1.66 2.30 81.1 -2.04 -0.38 27.2 82 9 9 6 4 3 1 0  U 2 P 9 2.43 3.77 109.5 -1.25 -0.50 18.1 86 8 6 5 9 0 2 0  DA 8 N DC 9 N DT 10 N DA 10 T DC 11 T DT 12 T 10 1.34 1.45 113.8 -1.26 -0.16 18.6 81 14 8 9 9 6 2 0  U 2 P 11 3.43 3.75 111.7 -1.10 -0.42 16.6 89 8 5 9 14 0 1 0  DT 7 N DA 8 N DC 9 N DT 10 N DC 5 T DA 6 T DA 7 T 12 4.42 4.42 116.5 -1.40 -0.52 19.5 84 12 5 6 9 0 2 0  DA 4 N DA 5 N DT 11 N DG 12 N DG 2 T DC 3 T DT 9 T DA 10 T DC 11 T 13 1.61 1.66 118.0 -1.73 -0.43 22.5 85 11 6 8 9 1 2 0  U 2 P DA 24 T DT 25 T 14 1.77 1.98 125.5 -1.78 -0.44 20.7 81 5 8 5 3 2 1 0   15 2.25 2.25 130.5 -1.29 -0.36 17.4 86 11 3 6 6 0 3 0  DA 4 N DA 5 N DG 6 N DT 7 N DA 8 N DC 9 N DT 10 N U 2 P C 6 P C 7 P DC 5 T DA 6 T DA 7 T DG 8 T DT 9 T DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T 16 1.50 1.60 141.8 -1.47 -0.38 19.6 81 13 10 5 7 3 2 0   17 1.25 1.48 142.1 -1.73 -0.52 21.4 83 16 9 11 4 2 3 0  DA 8 N DC 9 N DT 10 N DA 10 T DC 11 T DT 12 T 18 2.26 2.27 150.1 -1.29 -0.48 17.6 88 14 6 11 9 0 3 0  DA 4 N DA 5 N DG 14 N U 2 P C 6 P C 7 P DA 7 T DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T 19 1.80 2.01 157.6 -1.58 -0.46 18.8 85 11 6 9 8 1 4 0  U 2 P C 6 P C 7 P DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T 20 1.39 1.52 157.1 -1.88 -0.43 23.9 80 12 15 6 6 3 2 0   21 1.76 1.98 159.8 -1.52 -0.42 19.8 88 11 8 11 10 1 3 0  DA 4 N DA 5 N DG 14 N DA 7 T 22 1.77 2.02 164.2 -1.43 -0.37 18.7 85 9 5 6 8 1 4 0  DA 4 N DA 5 N DT 11 N DG 12 N DG 2 T DC 3 T DT 9 T DA 10 T DC 11 T 23 2.35 2.36 163.0 -1.22 -0.46 16.3 83 14 3 6 7 0 4 0  DA 4 N DA 5 N DT 11 N DG 12 N U 2 P C 6 P C 7 P DG 2 T DC 3 T DT 9 T DA 10 T DC 11 T DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T 24 2.25 2.25 179.9 -1.03 -0.35 15.4 86 15 3 7 11 0 4 0  DA 4 N DA 5 N DG 6 N DT 7 N DA 8 N DC 9 N DT 10 N U 2 P C 6 P C 7 P DC 5 T DA 6 T DA 7 T DG 8 T DT 9 T DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T 25 1.82 1.99 186.6 -1.27 -0.30 17.4 87 11 5 8 14 1 4 0  DA 4 N DA 5 N DG 6 N DT 7 N DA 8 N DC 9 N DT 10 N DC 5 T DA 6 T DA 7 T DG 8 T DT 9 T 26 1.64 1.62 221.4 -1.43 -0.44 20.0 88 17 11 15 12 1 1 0  DA 4 N DA 5 N DG 14 N U 2 P C 6 P C 7 P DA 7 T DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T DA 24 T DT 25 T 27 1.57 1.63 229.0 -1.57 -0.42 20.5 86 14 11 13 11 2 2 0  U 2 P C 6 P C 7 P DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T DA 24 T DT 25 T 28 1.65 1.63 235.5 -1.30 -0.41 18.7 85 16 8 10 11 1 2 0  DA 4 N DA 5 N DT 11 N DG 12 N U 2 P C 6 P C 7 P DG 2 T DC 3 T DT 9 T DA 10 T DC 11 T DT 15 T DC 18 T BRU 19 T DG 20 T DG 21 T DT 22 T DA 24 T DT 25 T 29 1.34 1.43 236.0 -1.62 -0.38 19.0 83 22 15 23 21 6 4 0  DG 14 N DA 7 T 30 1.83 2.19 236.2 -1.88 -0.50 24.0 83 16 14 12 6 2 3 0  DA 4 N DA 5 N DT 11 N DG 12 N DT 9 T DA 10 T DC 11 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.