PDBsum entry 4by1 Go to PDB code:  Pore analysis for: 4by1 calculated with MOLE 2.0 PDB id 4by1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   31 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.06 3.55 30.6 -1.62 -0.45 15.1 76 3 4 2 1 2 1 0   2 3.16 3.38 30.8 -1.62 -0.32 26.5 85 5 3 1 5 0 2 0   3 1.74 1.78 55.6 -2.08 -0.58 26.1 90 4 9 8 4 1 0 0   4 2.44 2.63 70.9 -1.97 -0.71 24.0 90 7 9 9 4 0 1 0   5 2.00 2.21 80.6 -1.83 -0.67 20.8 82 10 9 8 4 2 0 0  DA 8 N DC 9 N DT 10 N DT 11 N DA 13 T DC 14 T DT 15 T 6 1.74 1.78 90.1 -2.40 -0.53 28.4 85 6 7 6 4 1 0 0   7 2.08 2.89 90.8 -1.77 -0.45 25.9 87 11 10 5 9 0 0 0  DA 4 N 8 3.07 4.07 91.9 -1.55 -0.46 19.1 85 9 6 5 7 1 0 0  DA 8 N DC 9 N DT 10 N DT 11 N DA 13 T DC 14 T DT 15 T 9 2.31 2.31 102.5 -1.92 -0.44 23.7 84 12 6 7 4 1 4 0  U 2 P C 6 P C 7 P A 8 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DC 21 T DG 23 T DG 24 T DT 25 T 10 1.77 1.80 111.3 -1.80 -0.57 23.4 86 10 10 9 7 1 1 0  DA 4 N C 6 P C 7 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DT 18 T 11 1.48 1.71 118.5 -1.02 -0.27 17.2 85 11 5 7 13 2 1 0  A 5 P C 6 P C 7 P DT 28 T 12 1.49 1.68 130.1 -1.66 -0.27 21.1 83 17 6 7 11 4 4 0  U 2 P DT 25 T DC 26 T DA 27 T DT 28 T 13 2.38 2.38 131.6 -1.78 -0.55 23.6 83 12 9 10 4 1 2 0  U 2 P C 6 P C 7 P A 8 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DC 21 T DG 23 T DG 24 T DT 25 T 14 1.46 1.78 139.9 -1.35 -0.44 18.8 82 16 10 6 9 2 2 0  DA 4 N A 5 P C 6 P C 7 P DT 17 T DT 18 T DT 28 T 15 1.38 1.75 138.6 -1.66 -0.52 19.7 83 10 7 7 7 2 2 0  A 5 P C 6 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DT 28 T 16 1.24 1.74 143.7 -1.12 -0.35 18.6 90 9 8 12 16 0 2 0  DT 7 N DA 9 T DA 10 T 17 2.66 3.24 145.9 -2.07 -0.63 28.8 86 13 14 12 9 0 1 0   18 1.90 1.89 161.2 -1.95 -0.55 23.0 86 15 13 17 11 4 1 0  DT 7 N DA 9 T DA 10 T 19 2.04 3.77 152.2 -1.97 -0.58 24.9 84 14 10 13 7 1 3 0  DA 4 N C 6 P C 7 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DT 18 T 20 1.97 3.48 155.3 -1.94 -0.62 22.4 83 15 11 17 6 2 3 0  DA 4 N C 6 P C 7 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DT 18 T 21 1.31 1.35 159.8 -1.08 -0.39 15.3 88 11 7 14 15 0 5 0  DT 7 N DA 9 T DA 10 T 22 1.31 1.65 159.2 -1.59 -0.35 21.5 82 17 9 10 11 4 2 0  U 2 P DT 25 T DC 26 T DA 27 T DT 28 T 23 1.49 1.47 161.4 -1.90 -0.60 22.9 85 10 11 9 7 0 2 0  DA 4 N C 6 P C 7 P DA 13 T DC 14 T DT 15 T DT 16 T DT 17 T DT 18 T 24 1.84 1.85 167.1 -1.97 -0.56 25.5 87 15 14 16 11 2 2 0   25 2.02 2.51 166.2 -1.82 -0.56 20.0 86 17 11 19 10 3 4 0  DT 7 N DA 9 T DA 10 T 26 1.71 3.28 170.2 -1.91 -0.58 23.2 86 16 15 20 10 3 2 0   27 1.81 3.38 175.9 -1.89 -0.52 23.7 85 18 13 17 13 2 2 0  DA 4 N 28 2.04 3.91 172.8 -1.98 -0.50 26.6 86 17 12 13 14 1 2 0  DA 4 N 29 2.13 3.02 183.0 -1.81 -0.42 23.1 83 21 13 9 12 1 6 0  DA 4 N U 2 P C 6 P C 7 P A 8 P DT 17 T DT 18 T DC 21 T DG 23 T DG 24 T DT 25 T 30 2.03 2.11 198.3 -1.82 -0.56 23.9 83 20 15 11 7 1 3 0  DA 4 N U 2 P C 6 P C 7 P A 8 P DT 17 T DT 18 T DC 21 T DG 23 T DG 24 T DT 25 T 31 1.18 1.73 28.1 -2.48 -0.50 29.2 85 4 1 2 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.