PDBsum entry 4buj Go to PDB code:  Tunnel analysis for: 4buj calculated with MOLE 2.0 PDB id 4buj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.66 20.4 1.57 0.52 4.1 72 0 2 1 5 2 0 0   2 1.37 1.64 22.2 0.82 0.39 2.8 74 1 0 1 7 3 0 0   3 1.23 1.22 106.0 0.41 0.20 7.4 69 3 3 5 17 7 3 1   4 1.08 1.92 32.1 -0.45 -0.13 17.0 75 4 3 1 8 0 2 0   5 1.10 1.89 20.7 2.28 1.01 0.9 72 0 0 0 7 3 0 0   6 1.21 2.89 21.3 0.75 0.49 16.9 85 2 1 1 11 0 0 0   7 1.27 2.47 16.0 3.00 0.96 2.9 80 1 1 1 7 3 0 1   8 1.12 1.92 19.1 -0.58 -0.22 17.1 74 1 3 1 1 2 0 0   9 1.18 1.63 16.4 -1.59 -0.40 19.6 72 1 2 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.