PDBsum entry 4bkj Go to PDB code:  Tunnel analysis for: 4bkj calculated with MOLE 2.0 PDB id 4bkj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.45 3.45 16.6 2.12 0.66 5.6 74 0 1 1 7 1 1 0   2 1.43 1.56 24.1 1.14 0.38 6.9 72 1 1 0 7 2 2 0   3 1.43 3.65 25.3 1.62 0.48 9.0 76 1 2 1 7 1 0 0   4 1.41 3.72 25.4 1.95 0.50 6.3 72 0 2 1 8 1 1 0   5 1.34 3.19 18.2 1.80 0.40 1.6 59 0 0 0 4 2 0 0   6 1.16 1.20 20.2 1.29 0.60 7.5 62 1 2 0 3 3 0 0   7 1.50 1.86 16.0 0.19 0.10 1.7 77 0 0 0 3 1 1 0  EDO 1001 B EDO 1002 B 8 1.23 3.06 15.3 2.36 0.81 1.6 78 0 1 1 8 2 0 0  EDO 1006 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.