 |
PDBsum entry 4bkf
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4bkf calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4bkf
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 pores,
coloured by radius |
|
6 pores,
coloured by radius
|
6 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.04 |
2.07 |
42.9 |
-0.23 |
-0.09 |
8.5 |
81 |
|
2 |
3 |
4 |
5 |
3 |
1 |
0 |
|
|
 |
|
2 |
 |
1.79 |
1.95 |
30.2 |
-0.61 |
0.16 |
10.8 |
74 |
2 |
1 |
4 |
6 |
4 |
1 |
0 |
|
|
3 |
 |
1.20 |
1.20 |
30.6 |
0.06 |
-0.14 |
11.3 |
85 |
2 |
1 |
2 |
3 |
1 |
1 |
0 |
|
|
4 |
 |
1.63 |
1.65 |
31.1 |
-0.13 |
-0.01 |
12.4 |
78 |
1 |
3 |
2 |
3 |
2 |
1 |
0 |
|
|
5 |
 |
1.81 |
1.96 |
40.0 |
-0.23 |
0.00 |
8.5 |
81 |
2 |
2 |
5 |
6 |
3 |
1 |
0 |
|
 |
6 |
 |
1.78 |
1.86 |
25.6 |
-0.82 |
-0.46 |
15.3 |
80 |
0 |
4 |
0 |
4 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program