spacer
spacer

PDBsum entry 4bec

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4bec calculated with MOLE 2.0 PDB id
4bec
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.70 1.82 68.5 -1.92 -0.69 21.0 87 5 7 7 3 1 1 0  
2 1.98 2.02 88.6 -1.78 -0.58 16.4 90 4 8 13 3 2 0 0  
3 1.17 2.50 110.2 -1.87 -0.31 28.7 83 13 11 6 8 5 1 0  ATP 1887 A
4 1.33 1.28 123.4 -1.72 -0.52 21.1 88 11 13 14 8 4 0 0  MG 1886 A ATP 1887 A
5 1.29 1.32 126.7 -1.57 -0.33 19.6 82 8 7 8 5 5 2 0  ATP 1887 A
6 2.23 2.41 39.5 -2.50 -0.85 31.4 87 3 6 2 0 1 0 0  
7 1.27 1.27 43.3 -1.66 -0.27 26.3 81 3 4 4 4 2 1 0  ATP 1887 B
8 1.57 3.61 73.8 -1.77 -0.61 20.0 87 5 8 8 3 2 0 0  
9 1.58 3.54 100.5 -2.02 -0.58 22.8 84 8 8 8 4 4 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer