PDBsum entry 4bdp Go to PDB code:  Pore analysis for: 4bdp calculated with MOLE 2.0 PDB id 4bdp Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.23 30.4 -1.26 -0.63 6.5 82 1 1 3 0 2 1 0  DG 26 P DA 8 T DT 9 T DG 10 T DA 11 T 2 1.81 1.85 31.4 -1.33 -0.66 7.0 83 2 1 2 0 1 1 0  DC 23 P DA 24 P DT 25 P DG 26 P DG 10 T DA 11 T DT 12 T DG 13 T DC 14 T 3 1.21 1.21 44.8 -1.11 -0.70 7.5 86 2 0 3 0 1 2 0  DC 23 P DA 24 P DT 25 P DG 26 P DA 8 T DT 9 T DG 10 T DT 12 T DG 13 T DC 14 T 4 4.40 4.40 26.4 -2.24 -0.49 23.6 77 3 2 2 1 1 0 0  DC 23 P DT 25 P DG 26 P DC 27 P DA 3 T DT 5 T DC 7 T 5 3.57 3.68 35.5 -3.11 -0.75 29.0 86 6 2 5 1 0 0 0  DT 25 P DG 26 P DC 27 P DT 2 T DA 3 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.