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PDBsum entry 4bbs

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4bbs calculated with MOLE 2.0 PDB id
4bbs
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.11 1.28 18.2 -1.69 -0.55 27.9 82 2 3 2 3 0 0 0  
2 1.33 3.00 31.3 2.53 1.19 4.9 82 1 0 0 11 5 0 0  
3 1.28 3.46 31.9 2.34 1.07 4.6 80 1 0 0 10 5 0 0  
4 1.13 2.45 16.2 1.54 0.56 4.8 87 1 1 2 5 1 0 0  
5 1.11 2.38 16.6 1.02 0.39 9.1 88 1 1 2 6 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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