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PDBsum entry 4bbf

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4bbf calculated with MOLE 2.0 PDB id
4bbf
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 2.45 28.6 -0.80 -0.30 6.6 77 3 3 6 2 3 4 0  
2 1.81 3.89 43.1 -0.90 -0.32 18.0 76 6 5 3 4 2 1 0  O19 2229 D
3 1.72 3.15 43.2 -2.44 -0.51 36.2 77 8 8 1 2 2 1 0  
4 2.52 3.40 45.1 -1.89 -0.25 23.9 72 6 3 4 1 3 4 0  
5 1.79 2.80 55.7 -1.00 -0.30 17.0 83 7 7 7 6 2 4 0  
6 2.08 2.08 56.8 -1.74 -0.48 19.8 76 4 3 6 3 2 3 0  O19 2229 D
7 2.27 2.45 65.9 -1.44 -0.47 18.6 84 5 9 8 5 1 3 0  
8 1.72 3.15 69.7 -2.20 -0.52 27.7 75 7 10 3 1 3 6 0  
9 1.44 2.26 74.8 -2.44 -0.49 26.8 82 11 6 9 3 4 0 0  
10 1.23 2.41 76.1 -1.36 -0.47 19.7 81 9 9 9 6 3 5 0  
11 1.72 1.79 91.9 -1.89 -0.59 25.0 83 11 13 9 6 1 4 0  
12 1.19 2.20 134.7 -1.37 -0.42 19.1 79 6 13 11 12 4 4 0  O19 2229 D
13 1.17 2.21 144.9 -1.69 -0.44 24.2 78 12 18 10 10 5 5 0  
14 1.17 2.29 173.0 -1.36 -0.35 19.5 80 16 16 14 14 7 3 0  O19 2229 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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