PDBsum entry 4b7l

Tunnel analysis for: 4b7l calculated with

MOLE 2.0

PDB id

4b7l

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

1.33

19.4

-1.24

-0.74

11.6

88

1

2

3

0

1

1

0

2

1.17

1.33

24.4

-1.23

-0.54

9.4

86

1

1

4

0

2

2

0

3

1.17

1.33

28.6

-0.60

-0.28

13.0

82

3

1

3

4

1

1

0

4

1.18

1.33

34.7

-1.13

-0.32

13.2

86

4

1

4

2

2

1

0

5

1.16

1.33

48.3

-1.47

-0.41

18.5

85

5

2

5

3

2

1

0

6

1.31

1.30

18.1

-1.80

-0.49

24.7

84

1

3

2

2

1

0

0

7

1.17

1.43

15.3

-1.40

-0.13

23.6

86

2

2

2

4

1

1

0

8

1.15

1.42

17.6

-0.62

0.13

12.1

80

2

1

2

4

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.