 |
PDBsum entry 4b2c
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4b2c calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4b2c
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 tunnels,
coloured by tunnel radius |
|
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.17 |
1.42 |
20.5 |
0.25 |
-0.36 |
6.2 |
75 |
|
0 |
1 |
1 |
4 |
0 |
0 |
1 |
|
|
 |
|
2 |
 |
1.40 |
1.40 |
17.6 |
-1.34 |
-0.32 |
13.4 |
86 |
2 |
0 |
3 |
0 |
2 |
0 |
0 |
GOL 1072 D
|
|
3 |
 |
2.28 |
2.35 |
21.4 |
-1.58 |
-0.35 |
15.4 |
81 |
3 |
1 |
3 |
0 |
2 |
0 |
0 |
GOL 1072 D
|
|
4 |
 |
1.73 |
2.11 |
15.4 |
-2.43 |
-0.58 |
28.2 |
81 |
2 |
1 |
1 |
0 |
1 |
0 |
0 |
GOL 1072 B
|
 |
5 |
 |
1.52 |
1.58 |
16.1 |
-1.77 |
-0.48 |
23.7 |
71 |
2 |
1 |
1 |
0 |
2 |
0 |
1 |
GOL 1072 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program