PDBsum entry 4ayd Go to PDB code:  Pore analysis for: 4ayd calculated with MOLE 2.0 PDB id 4ayd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   22 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.19 4.32 26.7 -1.14 -0.01 21.8 89 4 1 2 3 1 0 0   2 2.19 4.32 27.3 -1.90 -0.13 24.1 88 4 1 2 1 1 0 0   3 3.00 3.10 34.0 -0.61 0.04 11.0 89 3 1 4 5 1 0 0   4 3.78 3.78 37.0 -1.68 -0.37 19.1 85 7 1 3 2 1 0 0   5 2.23 2.45 41.3 -0.56 0.04 13.5 86 5 0 2 4 2 1 0   6 2.50 4.82 45.1 -1.58 -0.45 23.8 87 6 6 3 6 0 0 0   7 2.68 2.70 47.7 -1.29 -0.17 18.1 81 5 3 5 4 3 1 0   8 2.58 3.22 48.1 -1.87 -0.31 22.3 84 8 1 4 1 2 1 0   9 1.80 1.89 51.0 -1.43 -0.34 17.4 81 6 4 6 3 2 0 0   10 1.94 2.24 52.4 -1.06 -0.17 18.2 85 6 3 3 4 2 1 0   11 2.44 2.44 52.8 -2.09 -0.59 26.3 86 4 4 3 1 1 0 0   12 1.81 1.92 60.2 -1.32 -0.20 16.3 84 7 3 6 5 3 0 0   13 2.35 2.54 64.0 -1.41 -0.16 18.2 83 6 6 5 5 4 0 0   14 1.95 2.22 64.6 -1.48 -0.27 22.5 82 8 6 6 5 3 0 0   15 1.89 1.88 66.2 -1.69 -0.44 21.0 81 8 5 5 3 2 0 0   16 1.81 1.94 69.1 -1.18 -0.26 16.0 85 7 4 8 7 2 0 0   17 1.83 1.89 73.1 -1.42 -0.24 16.8 83 8 4 7 4 4 1 0   18 2.57 3.25 76.8 -2.14 -0.42 26.0 83 12 3 6 1 2 1 0   19 1.83 1.91 81.0 -1.71 -0.42 19.8 82 9 6 6 4 3 0 0   20 1.84 1.93 84.6 -1.55 -0.27 19.5 83 8 7 10 7 5 0 0   21 2.93 3.91 86.0 -2.05 -0.43 25.3 85 8 5 4 3 2 0 0   22 1.82 1.90 87.9 -1.60 -0.27 17.9 83 9 5 8 5 5 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.