PDBsum entry 4ay9 Go to PDB code:  Pore analysis for: 4ay9 calculated with MOLE 2.0 PDB id 4ay9 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   16 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.60 2.63 25.5 -1.16 -0.19 17.9 85 2 2 3 3 1 1 0  NAG 1052 A 2 2.70 2.99 26.2 -2.25 -0.72 18.8 85 3 4 6 0 1 3 0   3 2.32 3.10 32.4 -1.63 -0.29 28.4 78 6 5 0 4 1 1 0   4 1.80 1.83 39.4 -1.28 -0.24 23.2 87 3 4 4 3 1 1 0   5 1.75 1.91 43.2 0.02 -0.10 7.5 76 2 3 3 7 2 1 0  TYS 335 Z 6 1.70 2.34 51.0 -1.27 -0.24 27.0 80 4 7 1 3 1 1 0   7 2.52 3.65 65.9 -1.48 -0.21 22.8 82 6 7 5 2 2 3 0   8 2.01 2.31 67.9 -1.62 -0.29 24.7 83 6 7 8 5 3 1 0  NAG 1052 G TYS 335 Z 9 1.53 1.52 68.2 -0.93 -0.19 18.6 85 2 4 5 4 1 0 0   10 1.62 4.89 93.0 -1.29 -0.19 21.3 79 10 5 5 6 4 1 1   11 2.67 2.97 108.1 -0.15 0.22 15.2 85 4 7 4 8 2 0 0   12 1.56 3.88 120.4 -2.02 -0.31 22.6 80 14 5 9 5 5 1 1   13 2.20 3.16 139.6 -1.66 -0.32 22.1 83 12 10 11 8 3 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.