spacer
spacer

PDBsum entry 4ai6

Go to PDB code: 
Top Page protein ligands metals pores links
Pore analysis for: 4ai6 calculated with MOLE 2.0 PDB id
4ai6
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
42 pores, coloured by radius 42 pores, coloured by radius 42 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.24 2.38 41.2 1.15 0.27 9.7 74 5 4 1 10 0 2 1  
2 1.27 1.27 42.2 0.34 0.06 14.8 72 4 2 2 6 2 1 0  
3 3.83 4.35 46.1 -2.70 -0.61 27.4 84 7 5 7 3 0 3 0  
4 1.27 1.44 76.5 -1.67 -0.49 19.6 86 10 6 10 8 2 2 0  
5 1.26 1.26 98.5 -1.82 -0.50 22.8 85 13 9 11 11 2 3 0  
6 1.68 1.72 109.6 -0.61 -0.14 19.0 81 10 12 4 14 5 0 0  
7 1.22 1.22 127.7 -1.26 -0.50 14.8 83 18 10 18 15 5 5 1  
8 2.19 2.40 132.8 -1.79 -0.54 17.3 84 12 9 18 7 4 10 0  
9 1.12 1.30 150.1 -1.11 -0.20 17.0 85 16 7 12 18 7 12 1  ADP 5401 B
10 1.37 2.48 167.3 -1.15 -0.22 20.4 78 16 11 9 20 6 7 0  
11 1.39 3.75 165.8 -1.01 -0.14 22.1 82 14 11 10 14 2 1 0  
12 1.72 1.73 176.7 -1.83 -0.37 22.9 83 20 15 12 9 6 10 0  
13 1.35 1.69 180.2 -1.65 -0.38 19.6 82 21 14 18 9 7 14 0  ADP 5401 A SO4 5403 A
14 1.56 1.60 187.3 -1.63 -0.49 18.8 82 19 19 17 14 7 11 0  
15 1.70 1.68 192.8 -0.43 -0.04 19.1 75 18 24 2 30 8 3 1  
16 1.28 2.20 198.3 -1.44 -0.32 19.9 83 21 14 21 13 9 14 0  ADP 5401 A
17 1.27 2.06 200.7 -1.32 -0.42 17.0 82 19 15 25 16 9 15 0  ADP 5401 A
18 1.39 2.48 202.4 -1.16 -0.27 18.6 83 16 13 15 22 3 7 0  
19 0.92 1.30 214.5 -1.51 -0.35 17.5 82 13 9 15 8 9 11 1  
20 1.47 4.04 222.1 -1.23 -0.26 20.3 77 19 17 14 19 7 9 0  
21 0.89 0.77 235.4 -0.04 0.13 9.7 79 13 10 18 28 13 6 0  ADP 5401 A
22 1.06 1.34 233.0 -1.47 -0.40 15.3 89 13 10 24 11 5 11 1  
23 1.20 1.35 283.1 -1.90 -0.49 21.7 83 31 21 27 18 9 15 0  
24 1.36 1.87 291.7 -0.93 -0.13 20.9 78 24 21 12 35 6 6 0  
25 2.07 2.24 286.0 -0.92 -0.23 17.4 77 28 29 15 29 12 15 1  SO4 5403 A
26 1.22 1.21 322.3 -1.06 -0.21 18.0 81 21 18 20 23 8 10 1  
27 2.62 4.23 26.3 -0.66 0.06 19.8 84 3 4 3 6 1 0 0  
28 1.16 1.16 26.3 -0.70 -0.31 12.1 88 4 0 6 7 1 1 0  
29 1.89 2.04 28.6 -1.11 -0.60 13.7 87 0 4 5 4 0 3 0  
30 1.47 2.07 41.0 -1.76 -0.27 16.9 78 11 3 6 6 2 3 0  
31 1.23 1.23 41.3 -0.97 -0.17 18.4 84 6 6 3 5 1 3 0  
32 2.01 3.79 46.2 -2.75 -0.47 29.4 79 9 5 5 1 3 1 0  
33 4.28 4.80 46.4 -2.65 -0.63 28.7 79 6 9 3 2 0 5 0  
34 1.14 1.53 47.4 -0.44 -0.09 10.1 79 5 2 5 12 3 2 0  
35 1.86 2.04 61.3 -1.20 -0.42 13.1 84 1 7 9 7 2 5 0  
36 1.95 2.09 65.1 -1.75 -0.32 22.7 82 8 7 4 10 2 0 0  
37 1.47 2.01 68.0 -2.43 -0.54 28.6 82 12 11 7 6 2 4 0  SO4 5403 B
38 2.41 2.41 69.4 -2.52 -0.60 27.5 85 8 12 6 3 1 5 0  SO4 5403 B
39 1.76 1.73 91.1 -2.21 -0.53 21.8 77 11 7 7 6 2 9 0  
40 1.95 2.35 91.8 -1.05 -0.44 9.4 82 3 6 12 13 2 9 0  
41 2.01 2.47 100.6 -1.35 -0.34 13.2 82 6 5 11 11 2 9 0  
42 1.10 1.61 25.1 -0.98 0.06 10.1 76 2 1 1 4 4 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer