PDBsum entry 4ag6 Go to PDB code:  Tunnel analysis for: 4ag6 calculated with MOLE 2.0 PDB id 4ag6 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.38 17.1 -1.57 -0.55 30.2 85 3 6 0 3 0 0 0   2 1.29 1.39 17.5 -0.91 -0.34 24.9 86 2 5 1 3 0 0 0   3 1.20 2.44 31.2 1.02 0.20 7.8 78 2 1 0 8 1 0 0  MSE 256 B MSE 586 B 4 1.28 1.44 18.9 -0.12 -0.21 10.6 85 2 1 0 4 1 0 0   5 1.29 1.44 21.3 -0.38 -0.25 14.2 85 2 3 0 4 1 0 0   6 1.23 1.57 16.7 -0.73 0.15 14.7 77 2 2 1 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.