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PDBsum entry 4zfk

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protein ligands Protein-protein interface(s) links
Hydrolase PDB id
4zfk

 

 

 

 

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Contents
Protein chains
227 a.a.
Ligands
EDO ×27
GLN ×4
Waters ×1153
PDB id:
4zfk
Name: Hydrolase
Title: Ergothioneine-biosynthetic ntn hydrolase egtc with glutamine
Structure: Amidohydrolase egtc. Chain: a, b, c, d. Engineered: yes. Mutation: yes
Source: Mycobacterium smegmatis. Organism_taxid: 246196. Gene: egtc, msmeg_6248, msmei_6087. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
1.82Å     R-factor:   0.147     R-free:   0.177
Authors: A.Vit,F.P.Seebeck,W.Blankenfeldt
Key ref: A.Vit et al. (2015). Structure of the Ergothioneine-Biosynthesis Amidohydrolase EgtC. Chembiochem, 16, 1490-1496. PubMed id: 26079795 DOI: 10.1002/cbic.201500168
Date:
21-Apr-15     Release date:   01-Jul-15    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
A0R5M9  (EGTC_MYCS2) -  Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Seq:
Struc:
227 a.a.
227 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 4 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.3.5.1.118  - gamma-glutamyl hercynylcysteine S-oxide hydrolase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: gamma-L-glutamyl-hercynylcysteine S-oxide + H2O = S-(hercyn-2-yl)-L- cysteine S-oxide + L-glutamate
gamma-L-glutamyl-hercynylcysteine S-oxide
+ H2O
= S-(hercyn-2-yl)-L- cysteine S-oxide
Bound ligand (Het Group name = GLN)
matches with 81.82% similarity
+ L-glutamate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Key reference    
 
 
DOI no: 10.1002/cbic.201500168 Chembiochem 16:1490-1496 (2015)
PubMed id: 26079795  
 
 
Structure of the Ergothioneine-Biosynthesis Amidohydrolase EgtC.
A.Vit, G.T.Mashabela, W.Blankenfeldt, F.P.Seebeck.
 
  ABSTRACT  
 
The ubiquitous sulfur metabolite ergothioneine is biosynthesized by oxidative attachment of a sulfur atom to the imidazole ring of Nα-trimethylhistidine. Most actinobacteria, including Mycobacterium tuberculosis, use γ-glutamyl cysteine as a sulfur donor. In subsequent steps the carbon scaffold of γ-glutamyl cysteine is removed by the glutamine amidohydrolase EgtC and the β-lyase EgtE. We determined the crystal structure of EgtC from Mycobacterium smegmatis in complex with its physiological substrate. The set of active site residues that define substrate specificity in EgtC are highly conserved, even in homologues that are not involved in ergothioneine production. This conservation is compounded by the phylogenetic distribution of EgtC-like enzymes indicates that their last common ancestor might have emerged for a purpose other than ergothioneine production.
 

 

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