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PDBsum entry 4ass

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protein dna_rna Protein-protein interface(s) links
Structural protein/DNA PDB id
4ass
Jmol PyMol
Contents
Protein chains
(+ 3 more) 93 a.a.
DNA/RNA
PDB id:
4ass
Name: Structural protein/DNA
Title: Tubr bound to tubc - 26 bp - from bacillus thuringiensis ser israelensis pbtoxis
Structure: Tubr from bacillus thuringiensis pbtoxis. Chain: a, b, c, d, e, f, g, h, i. Engineered: yes. Tubc from bacillus thuringiensis pbtoxis 26 bp. Chain: y. Fragment: sense strand. Tubc from bacillus thuringiensis pbtoxis 26 bp. Chain: z. Fragment: antisense strand
Source: Bacillus thuringiensis. Organism_taxid: 1428. Strain: serovar israelensis. Atcc: 35646. Expressed in: escherichia coli. Expression_system_taxid: 511693. Expression_system_variant: c41. Synthetic: yes. Atcc: 35646
Resolution:
7.00Å     R-factor:   0.411     R-free:   0.483
Authors: C.H.S.Aylett,J.Lowe
Key ref: C.H.Aylett and J.Löwe (2012). Superstructure of the centromeric complex of TubZRC plasmid partitioning systems. Proc Natl Acad Sci U S A, 109, 16522-16527. PubMed id: 23010931 DOI: 10.1073/pnas.1210899109
Date:
02-May-12     Release date:   03-Oct-12    
PROCHECK
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 Headers
 References

Protein chains
Pfam  
Q8KNP2  (Q8KNP2_BACTI) -  Putative DNA-binding protein
Seq:
Struc:
104 a.a.
93 a.a.
Key:    Secondary structure

 Gene Ontology (GO) functional annotation 
  GO annot!
  Biochemical function     DNA binding     1 term  

 

 
DOI no: 10.1073/pnas.1210899109 Proc Natl Acad Sci U S A 109:16522-16527 (2012)
PubMed id: 23010931  
 
 
Superstructure of the centromeric complex of TubZRC plasmid partitioning systems.
C.H.Aylett, J.Löwe.
 
  ABSTRACT  
 
Bacterial plasmid partitioning systems segregate plasmids into each daughter cell. In the well-understood ParMRC plasmid partitioning system, adapter protein ParR binds to centromere parC, forming a helix around which the DNA is externally wrapped. This complex stabilizes the growth of a filament of actin-like ParM protein, which pushes the plasmids to the poles. The TubZRC plasmid partitioning system consists of two proteins, tubulin-like TubZ and TubR, and a DNA centromere, tubC, which perform analogous roles to those in ParMRC, despite being unrelated in sequence and structure. We have dissected in detail the binding sites that comprise Bacillus thuringiensis tubC, visualized the TubRC complex by electron microscopy, and determined a crystal structure of TubR bound to the tubC repeat. We show that the TubRC complex takes the form of a flexible DNA-protein filament, formed by lateral coating along the plasmid from tubC, the full length of which is required for the successful in vitro stabilization of TubZ filaments. We also show that TubR from Bacillus megaterium forms a helical superstructure resembling that of ParR. We suggest that the TubRC DNA-protein filament may bind to, and stabilize, the TubZ filament by forming such a ring-like structure around it. The helical superstructure of this TubRC may indicate convergent evolution between the actin-containing ParMRC and tubulin-containing TubZRC systems.
 

 

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