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PDBsum entry 471d

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Ligand/metal interactions PDB id
471d
C43-G48-C43-G48-
A44-A44-U36-U36-
C43-G48-C43-G48

Ligands
C43-G48-C43-G48-
A44-A44-U36-U36-
C43-G48-C43-G48
×2
C43 1(A) to G48 12(A)
C43 13(B) to G48 24(B)
Metals
_MG ×2
MG 101(A)
MG 100(A)
  
Ligand C43-G48-C43-G48-A44-A44-U36-U36-C43-G48-C43-G48

C43 - 2'-O-Methyoxyethyl-Cytidine-5'-Monophosphate Formula: C12H20N3O9P
G48 - 2'-O-Methyoxyethyl-Guanosine-5'-Monophosphate Formula: C13H20N5O9P
A44 - 2'-O-Methyoxyethyl-Adenosine 5'-Monophosphate Formula: C13H20N5O8P
U36 - 2'-O-Methyoxyethyl-Uridine-5'-Monophosphate Formula: C12H19N2O10P
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
C43 1(A) 25 21 0 0 4 0 - - - -
G48 2(A) 28 28 1 0 0 0 0 0 0 0
C43 3(A) 25 25 1 0 0 0 0 0 0 0
G48 4(A) 28 28 1 0 0 0 0 0 0 0
A44 5(A) 27 27 1 0 0 0 0 0 0 0
A44 6(A) 27 27 1 0 0 0 0 0 0 0
U36 7(A) 25 25 1 0 0 0 0 0 0 0
U36 8(A) 25 25 1 0 0 0 0 0 0 0
C43 9(A) 25 25 1 0 0 0 0 0 0 0
G48 10(A) 28 28 1 0 0 0 0 0 0 0
C43 11(A) 25 25 1 0 0 0 0 0 0 0
G48 12(A) 28 28 1 0 0 0 0 0 0 0
Advanced Analysis
Residue Name Mismatches Count
C43 1(A) - 0
G48 2(A) - 0
C43 3(A) OP1: OP3|OP2: OP1 2
G48 4(A) - 0
A44 5(A) OP1: OP2|OP2: OP1 2
A44 6(A) OP1: OP2|OP2: OP1 2
U36 7(A) - 0
U36 8(A) - 0
C43 9(A) OP1: OP3|OP2: OP1 2
G48 10(A) - 0
C43 11(A) OP1: OP3|OP2: OP1 2
G48 12(A) - 0
Additional Information

LIGPLOT of interactions involving ligand C43-G48-C43-G48-A44-A44-U36-U36-C43-G48-C43-G48

Jmol




List of
interactions

C43 1(A) to G48 12(A)
  
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