spacer
spacer

PDBsum entry 3zos

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3zos calculated with MOLE 2.0 PDB id
3zos
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.75 1.89 44.6 0.25 0.25 18.0 82 4 3 1 11 2 0 0  0LI 1000 A 0LI 1004 A
2 1.29 1.29 55.1 -0.74 -0.20 13.7 82 5 5 3 7 4 0 0  0LI 1000 B
3 1.15 1.44 55.2 -0.18 -0.01 15.6 82 3 5 4 10 4 0 0  0LI 1000 A EDO 1002 A
4 1.29 1.29 58.5 0.45 0.15 11.4 80 5 3 0 11 3 0 0  0LI 1004 A 0LI 1000 B
5 1.29 1.30 86.7 -0.22 -0.03 17.6 79 5 6 2 15 3 1 0  0LI 1000 B
6 1.77 1.94 119.9 -0.14 0.05 16.5 78 8 6 2 18 4 1 0  0LI 1004 A 0LI 1000 B
7 1.57 2.71 120.1 -0.89 -0.17 17.6 80 9 8 5 14 5 1 0  0LI 1000 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer