PDBsum entry 3zn1

Tunnel analysis for: 3zn1 calculated with

MOLE 2.0

PDB id

3zn1

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.89

2.05

28.9

-0.30

0.42

10.4

75

3

1

1

6

4

0

0

FAD 900 A

2

1.52

1.52

30.9

-0.19

-0.01

10.7

82

3

1

1

8

1

1

0

FAD 900 A

3

1.76

1.93

31.7

-0.84

-0.10

13.9

78

3

2

1

6

2

1

0

FAD 900 A

4

1.49

1.49

35.8

0.09

0.36

10.1

80

3

1

1

10

4

0

0

FAD 900 A

5

1.33

1.53

31.8

0.33

0.15

10.5

82

2

0

3

10

1

1

0

6

1.22

1.36

20.2

1.04

0.39

5.0

75

2

0

1

4

2

2

0

7

1.23

2.70

21.1

0.96

0.35

6.4

70

2

0

1

4

2

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.