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PDBsum entry 3zfx

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Pore analysis for: 3zfx calculated with MOLE 2.0 PDB id
3zfx
Pores calculated on whole structure Pores calculated excluding ligands

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16 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.78 1.89 26.1 -1.12 -0.52 24.6 84 3 4 1 2 0 1 0  
2 4.38 5.25 27.8 -2.62 -0.55 32.1 82 5 5 3 1 0 1 0  
3 1.57 4.06 27.9 -1.74 -0.32 15.6 93 2 1 4 3 1 0 0  
4 2.59 3.78 28.1 -1.74 -0.30 22.5 81 3 5 0 3 1 2 0  
5 2.75 3.90 30.9 -0.65 -0.06 15.4 75 3 2 0 4 2 3 0  
6 3.63 5.67 32.0 -2.57 -0.51 31.9 81 5 5 3 1 0 0 0  
7 4.34 5.92 32.2 -2.67 -0.75 27.9 84 7 4 4 0 0 1 0  
8 3.37 3.38 42.5 -2.12 -0.72 22.6 85 6 6 3 2 0 0 0  
9 3.50 4.82 44.8 -2.43 -0.56 26.6 84 7 6 7 3 0 0 0  
10 1.79 1.89 48.2 -1.23 -0.30 19.6 79 5 4 1 4 2 2 0  
11 3.38 3.38 56.9 -2.32 -0.60 25.6 83 8 9 6 2 0 0 0  
12 2.17 3.47 59.5 -1.42 -0.23 20.5 75 8 6 0 5 3 3 0  
13 2.75 3.80 62.1 -1.77 -0.30 24.5 78 9 6 5 4 2 3 0  
14 2.44 2.71 69.9 -1.87 -0.59 22.6 88 5 6 6 4 1 0 0  
15 2.68 3.18 114.2 -1.90 -0.41 23.7 82 12 8 8 8 3 3 0  
16 1.37 1.36 45.2 -1.16 -0.39 16.5 88 5 1 2 5 0 1 0  
17 1.37 1.36 56.2 -0.63 -0.28 8.8 87 4 0 4 6 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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