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PDBsum entry 3wa9
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 3wa9 calculated with MOLE 2.0 PDB id
3wa9
Pores calculated on whole structure Pores calculated excluding ligands
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29 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.80 3.80 25.3 -1.82 -0.69 24.1 85 3 1 1 1 0 0 0  DG 59 I DA 133 I DG 134 I DA 165 J DT 239 J
2 3.12 3.12 25.3 -0.91 -0.30 16.5 79 2 0 2 1 0 0 0  DG 18 I DT 90 I DT 91 I DT 92 I DT 93 I DC 195 J
DT 198 J DC 199 J DA 200 J DA 201 J DG 271 J
3 3.39 3.39 25.7 -0.67 -0.77 6.6 83 1 0 0 0 0 0 0  DA 7 I DT 8 I DC 16 I DT 92 I DT 93 I DG 205 J DC
206 J DG 280 J DG 281 J DT 282 J
4 3.65 3.78 29.3 -0.30 -0.25 6.7 95 2 0 4 2 1 0 0  DT 48 I DT 120 I DG 121 I DT 123 I DA 124 I DA
165 J DT 167 J DC 168 J DT 169 J DA 170 J DC 171 J
5 3.63 3.81 30.7 -1.65 -0.72 20.1 85 3 1 1 1 0 0 0  DA 7 I DT 8 I DG 18 I DT 92 I DC 195 J DG 205 J
DC 206 J DG 271 J DG 280 J DG 281 J DT 282 J
6 2.84 2.88 30.8 -0.90 -0.81 7.9 108 1 0 4 0 0 0 0  DG 46 I DC 47 I DT 48 I DT 123 I DA 124 I DA 165
J DA 173 J DT 251 J
7 2.04 2.04 37.5 -0.78 -0.78 8.0 81 2 1 0 0 0 0 0  DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I D
A 133 I DG 134 I DG 233 J DC 234 J DC 235 J DT
236 J DT 237 J DT 238 J DT 239 J
8 2.84 2.88 39.5 -0.30 -0.45 5.8 95 1 0 3 2 1 0 0  DG 46 I DC 47 I DT 48 I DT 120 I DG 121 I DT 123
I DA 124 I DT 167 J DC 168 J DT 169 J DA 170 J DC
171 J DA 173 J DT 251 J
9 1.37 1.39 41.3 -1.42 -0.56 18.5 80 5 0 1 1 0 1 0  DA 72 I DA 77 I DG 78 I DC 79 I DG 214 J DC 215 J
DT 216 J DG 217 J DA 218 J DA 219 J
10 3.03 3.03 60.3 -2.23 -0.44 26.6 85 8 1 4 2 1 1 0  DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I DC 195 J
DT 258 J DA 259 J DC 260 J DA 261 J DT 264 J DT
265 J
11 1.80 4.41 74.9 -2.13 -0.55 22.5 84 13 2 8 2 3 1 0  DT 48 I DA 165 J
12 2.37 2.37 78.2 -1.40 -0.43 19.5 76 5 0 0 2 0 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DT 74 I DG 205 J DC
215 J DT 216 J DG 217 J DA 218 J DA 219 J DT 220
J DA 279 J DG 280 J DT 282 J DT 288 J DT 289 J DG
290 J
13 2.05 2.76 80.5 -2.07 -0.42 21.9 87 11 2 11 2 4 1 0  DT 48 I DA 165 J DC 195 J
14 1.77 4.37 81.7 -2.11 -0.52 23.3 81 13 2 4 2 3 1 0  DG 46 I DC 47 I DT 48 I DA 124 I DA 173 J DG 249
J DT 250 J DT 251 J DT 252 J
15 2.00 2.80 87.3 -2.07 -0.39 22.7 83 11 2 7 2 4 1 0  DG 46 I DC 47 I DT 48 I DA 124 I DA 173 J DC 195
J DG 249 J DT 250 J DT 251 J DT 252 J
16 1.80 2.10 88.3 -1.60 -0.34 26.1 79 9 4 1 3 1 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DG 205 J DA 279 J DG
280 J DT 282 J
17 2.37 2.37 101.2 -1.26 -0.53 16.8 84 7 1 4 2 0 2 0  DC 9 I DC 10 I DG 18 I DT 74 I DT 92 I DC 195 J
DC 215 J DT 216 J DG 217 J DA 218 J DA 219 J DT
220 J DA 279 J DG 280 J DT 288 J DT 289 J DG 290 J
18 1.19 1.20 114.7 -1.00 -0.55 11.9 91 6 0 3 3 1 0 0  DG 31 I DT 32 I DG 40 I DA 41 I DA 42 I DG 46 I
DC 47 I DT 48 I DA 124 I DA 173 J DG 249 J DT 250
J DT 251 J DT 252 J DA 257 J DT 258 J DT 264 J DT
265 J
19 2.38 2.38 113.1 -1.61 -0.50 20.8 79 7 0 1 2 0 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DA 72 I DA 73 I DT
74 I DT 75 I DG 205 J DC 215 J DT 216 J DA 279 J
DG 280 J DT 282 J DT 288 J DT 289 J DG 290 J
20 1.31 1.32 114.0 -1.27 -0.55 15.9 81 6 0 1 2 0 2 0  DC 9 I DC 10 I DC 16 I DA 77 I DG 78 I DC 79 I DT
92 I DT 93 I DG 205 J DC 206 J DG 214 J DC 215 J
DT 216 J DG 217 J DA 218 J DA 219 J DA 279 J DG
280 J DG 281 J DT 288 J DT 289 J DG 290 J
21 1.49 1.51 118.5 -1.04 -0.54 11.6 93 6 0 6 4 1 0 0  DG 31 I DT 32 I DG 40 I DA 41 I DA 42 I DT 48 I D
A 165 J DG 249 J DT 250 J DA 257 J DT 258 J DT
264 J DT 265 J
22 1.61 1.63 126.9 -2.29 -0.40 27.9 82 19 2 4 4 4 1 0  DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I DT 258 J
DA 259 J DC 260 J DA 261 J DT 264 J DT 265 J
23 1.77 4.36 126.6 -1.67 -0.49 21.1 84 13 5 6 3 2 1 0  DA 7 I DT 8 I DC 9 I DC 10 I DT 48 I DA 165 J DG
205 J DA 279 J DG 280 J DT 282 J
24 1.28 1.29 136.7 -1.39 -0.46 20.4 81 11 4 1 4 1 2 0  DC 9 I DC 10 I DA 77 I DG 78 I DC 79 I DG 214 J
DC 215 J DT 216 J DG 217 J DA 218 J DA 219 J DT
288 J DT 289 J DG 290 J
25 1.74 4.44 147.4 -1.52 -0.49 19.9 81 13 5 3 3 2 1 0  DC 10 I DC 16 I DG 46 I DC 47 I DT 48 I DT 92 I
DT 93 I DA 124 I DA 173 J DG 205 J DC 206 J DG
249 J DT 250 J DT 251 J DT 252 J DA 279 J DG 280
J DG 281 J
26 1.78 2.06 145.9 -1.46 -0.39 23.1 81 12 4 2 4 1 1 0  DC 9 I DC 10 I DA 72 I DA 73 I DT 74 I DT 75 I DC
215 J DT 216 J DT 288 J DT 289 J DG 290 J
27 1.36 1.35 185.6 -1.49 -0.50 18.2 83 15 5 5 5 3 2 0  DC 9 I DC 10 I DA 77 I DG 78 I DC 79 I DT 120 I
DG 121 I DT 123 I DT 167 J DC 168 J DT 169 J DA
170 J DC 171 J DG 214 J DC 215 J DT 216 J DG 217
J DA 218 J DA 219 J DT 288 J DT 289 J DG 290 J
28 1.80 4.40 191.1 -1.54 -0.49 20.2 81 16 5 3 4 2 1 0  DC 9 I DC 10 I DG 46 I DC 47 I DT 48 I DA 72 I DA
73 I DT 74 I DT 75 I DA 124 I DA 173 J DC 215 J
DT 216 J DG 249 J DT 250 J DT 251 J DT 252 J DT
288 J DT 289 J DG 290 J
29 1.76 4.40 191.7 -1.51 -0.47 18.8 83 16 5 5 5 3 1 0  DC 9 I DC 10 I DT 74 I DT 120 I DG 121 I DT 123 I
DT 167 J DC 168 J DT 169 J DA 170 J DC 171 J DC
215 J DT 216 J DG 217 J DA 218 J DA 219 J DT 220
J DT 288 J DT 289 J DG 290 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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