PDBsum entry 3w9e Go to PDB code:  Tunnel analysis for: 3w9e calculated with MOLE 2.0 PDB id 3w9e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.52 1.69 24.2 -1.24 -0.37 21.4 96 3 1 2 2 0 0 0   2 1.33 1.68 22.4 0.03 -0.11 4.0 86 0 1 4 2 2 0 0   3 1.30 1.30 16.2 -2.10 -0.18 19.8 77 3 1 1 1 1 3 0   4 1.26 2.17 15.8 -0.17 -0.04 9.4 77 0 2 2 3 2 2 0   5 1.12 1.12 16.1 0.36 -0.35 4.0 84 0 2 1 3 0 1 0   6 1.10 1.10 19.3 0.25 -0.33 5.4 75 0 1 0 3 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.