PDBsum entry 3w5k Go to PDB code:  Pore analysis for: 3w5k calculated with MOLE 2.0 PDB id 3w5k Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.31 2.49 37.8 -1.88 -0.47 26.5 77 5 3 2 2 1 2 1   2 1.31 1.59 38.1 -1.77 -0.63 21.1 87 5 4 4 2 1 1 0   3 1.34 1.59 51.9 -1.74 -0.53 20.6 88 5 7 8 3 2 0 0   4 1.68 1.68 57.3 -1.66 -0.56 16.9 87 3 7 6 1 1 1 0   5 1.86 3.26 70.1 -1.15 -0.29 15.7 85 8 4 6 4 1 1 1   6 1.59 1.78 73.6 -1.59 -0.54 17.8 89 5 7 10 2 2 2 1   7 1.52 1.96 84.3 -1.66 -0.52 18.2 89 5 10 14 3 3 1 1   8 2.34 3.04 72.2 -3.01 -0.63 26.1 77 1 2 3 1 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.