PDBsum entry 3w3m

Pore analysis for: 3w3m calculated with

MOLE 2.0

PDB id

3w3m

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

3 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.50

33.9

-0.03

0.53

13.4

66

4

1

1

2

7

1

0

SO4 919 A

2

1.10

1.67

40.8

-0.56

-0.01

7.3

70

4

0

3

2

6

1

2

3

1.09

1.69

47.5

-0.16

0.13

6.8

69

3

1

3

3

6

2

2

SO4 919 A

4

1.52

1.53

48.3

0.38

0.17

7.7

67

2

3

2

2

9

1

0

SO4 919 A NAG 1 B NAG 2 B

5

1.22

1.48

55.1

0.14

0.13

6.6

67

3

3

3

1

12

1

0

SO4 919 A NAG 1 B NAG 2 B BMA 3 B

6

1.19

1.65

67.3

0.08

-0.02

3.6

67

1

2

5

1

10

2

2

SO4 919 A NAG 1 B NAG 2 B BMA 3 B

7

1.11

1.24

116.1

-0.49

0.03

15.9

81

5

3

3

5

4

0

0

NAG 916 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.