PDBsum entry 3w2c

Tunnel analysis for: 3w2c calculated with

MOLE 2.0

PDB id

3w2c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

3 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

1.15

62.6

-1.65

-0.16

16.6

72

7

4

3

2

6

3

0

2

1.21

1.24

21.9

-1.26

-0.36

14.7

77

3

1

2

2

1

1

0

3

1.20

1.24

27.7

-1.60

-0.25

18.7

75

2

4

3

2

2

1

0

4

1.20

1.24

32.9

-1.49

-0.43

18.4

76

1

5

1

2

3

1

0

5

1.20

1.24

37.9

-1.95

-0.46

23.6

80

2

7

2

2

2

1

0

6

1.20

1.24

43.0

-1.86

-0.23

18.7

76

4

6

3

2

2

1

0

7

1.20

1.25

44.4

-1.30

-0.47

18.2

80

3

6

2

5

2

1

0

8

1.20

1.25

50.7

-1.77

-0.35

20.1

76

3

6

3

2

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.