PDBsum entry 3w11

Tunnel analysis for: 3w11 calculated with

MOLE 2.0

PDB id

3w11

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.50

18.2

-1.31

-0.24

20.5

73

2

1

1

2

1

0

1

NAG 1 G

2

1.22

1.41

21.5

-0.67

-0.05

12.5

79

2

0

3

2

1

0

1

NAG 507 E

3

1.34

2.92

15.4

0.82

0.40

6.5

74

1

0

1

4

2

0

0

4

1.48

1.70

23.2

-0.26

0.25

6.7

71

1

0

3

3

3

0

1

5

1.13

2.96

26.3

2.53

0.91

3.6

67

1

0

0

9

3

1

0

6

1.12

2.89

20.2

2.44

0.72

1.7

83

0

1

0

6

0

1

0

7

1.31

1.38

15.1

-0.31

-0.15

11.1

85

2

1

1

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.