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Ligand clusters for UniProt code P0C1B3

Ligand clusters for P0C1B3: Alpha-amylase A type-1/2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=amy1 PE=1 SV=1

Top 6 (of 7) ligand clusters
Cluster 1.
5 ligand types
8 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
8 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 2taaA  
 

Structures

PDB   Schematic diagram
2taaA    
2gvyA    
3vx1A    
3vx0A    
6taaA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: ABC × 1
Modified acarbose hexasaccharide
PDB code: 7taa(A).

_Gd
 
2. Metal: _GD × 3
PDB codes: 3vx0(A),


 
3. Ligand: BGC-GLC × 2
BGC=Beta-D-Glucose, GLC=Alpha-D-Glucose.
PDB codes: 2gvy(A),


 
4. Ligand: GLC-GLC × 1
GLC=Alpha-D-Glucose.
PDB code: 2gvy(A).

_Ca
 
5. Metal: _CA × 1
PDB code: 6taa(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG × 4
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 2gvy(A), 3kwx(A), 3vx0(A), 3vx1(A).


 
2. Ligand: NAG-NAG-BMA × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB code: 2guy(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: GLC-GLC × 1
GLC=Alpha-D-Glucose.
PDB code: 2gvy(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 8
PDB codes: 2guy(A), 2gvy(A), 2taa(A), 3kwx(A), 3vx0(A), 3vx1(A), 6taa(A), 7taa(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Gd
 
1. Metal: _GD × 1
PDB code: 3vx0(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Gd
 
1. Metal: _GD × 1
PDB code: 3vx0(A).

 

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