PDBsum entry 3vsv Go to PDB code:  Pore analysis for: 3vsv calculated with MOLE 2.0 PDB id 3vsv Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   20 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.73 4.06 27.1 -0.74 0.16 20.6 81 4 5 2 5 3 0 0   2 3.53 3.58 36.3 -1.85 -0.39 32.1 80 5 7 3 2 3 0 0   3 1.27 1.62 53.4 -0.45 -0.21 15.5 79 6 2 2 7 3 1 0  XYS 708 A XYS 709 A 4 1.59 1.60 53.8 -1.69 -0.27 20.2 78 6 6 3 4 4 1 0  XYP 704 A 5 3.23 5.57 59.2 -1.22 -0.08 27.1 82 6 9 4 7 4 0 0   6 1.30 1.63 63.1 -0.61 -0.03 14.2 80 8 2 6 6 2 1 0   7 1.58 1.59 75.7 -1.97 -0.33 26.6 77 11 9 2 5 4 2 0  XYP 704 A XYS 708 C 8 1.69 2.64 78.9 -1.76 -0.46 23.2 83 10 12 4 5 3 1 0  XYP 704 A XYP 707 A XYS 708 C 9 1.70 2.39 81.2 -1.98 -0.52 25.3 84 11 10 5 5 2 1 0  XYP 704 A XYP 707 A XYS 708 C 10 2.00 3.38 82.8 -2.00 -0.48 21.7 79 11 9 5 4 4 2 0  XYP 707 A 11 2.02 3.00 82.2 -1.96 -0.43 24.3 78 10 11 4 4 5 2 0  XYP 707 A 12 1.78 1.94 82.3 -2.56 -0.75 34.1 84 14 13 5 2 1 1 0  XYP 704 A XYS 708 C 13 1.74 3.66 94.9 -1.82 -0.51 23.4 84 13 11 6 5 2 2 0  XYP 704 A XYS 708 C XYP 701 D 14 1.77 2.53 96.2 -1.56 -0.32 21.9 81 10 14 6 8 6 2 0  XYP 701 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.